Ser604
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Home > Phosphorylation Site Page: > Ser604  -  SAFB1 (human)

Site Information
REKRsVVsFDkVkEP   SwissProt Entrez-Gene
Blast this site against: NCBI  SwissProt  PDB 
Site Group ID: 452838

In vivo Characterization
Methods used to characterize site in vivo:
mass spectrometry ( 1 , 2 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 19 , 20 , 21 , 22 , 23 , 24 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 , 50 , 51 , 52 )
Disease tissue studied:
breast cancer ( 10 , 11 , 22 , 23 ) , breast ductal carcinoma ( 10 ) , HER2 positive breast cancer ( 2 ) , luminal A breast cancer ( 2 ) , luminal B breast cancer ( 2 ) , breast cancer, surrounding tissue ( 2 ) , breast cancer, triple negative ( 2 , 10 ) , cervical cancer ( 38 ) , cervical adenocarcinoma ( 38 ) , leukemia ( 26 , 28 , 46 ) , acute myelogenous leukemia ( 26 ) , acute erythroid leukemias, including erythroleukemia (M6a) and very rare pure erythroid leukemia (M6b) ( 21 ) , acute megakaryoblastic leukemia (M7) ( 21 ) , acute monoblastic leukemia (M5a) or acute monocytic leukemia (M5b) ( 21 ) , acute myeloblastic leukemia, with granulocytic maturation (M2) ( 21 ) , acute myeloblastic leukemia, without maturation (M1) ( 21 ) , chronic myelogenous leukemia ( 46 ) , T cell leukemia ( 28 ) , lung cancer ( 7 , 15 , 23 , 33 , 44 ) , non-small cell lung cancer ( 23 , 44 ) , non-small cell lung adenocarcinoma ( 7 , 15 ) , lymphoma ( 12 ) , B cell lymphoma ( 21 ) , Burkitt's lymphoma ( 12 ) , non-Hodgkin's lymphoma ( 21 ) , follicular lymphoma ( 12 ) , mantle cell lymphoma ( 12 ) , neuroblastoma ( 20 ) , ovarian cancer ( 10 ) , multiple myeloma ( 21 ) , melanoma skin cancer ( 6 )
Relevant cell line - cell type - tissue:
'muscle, skeletal' ( 27 ) , 293 (epithelial) [AT1 (human), transfection, AT1R stable transfected HEK293] ( 35 ) , 293 (epithelial) [AT1 (human), transfection] ( 34 ) , 293 (epithelial) ( 9 ) , 293E (epithelial) ( 30 ) , 786-O (renal) [VHL (human), transfection] ( 4 ) , 786-O (renal) ( 4 ) , A431 (epithelial) ( 52 ) , A549 (pulmonary) ( 16 ) , AML-193 (monocyte) ( 21 ) , BJAB (B lymphocyte) ( 12 ) , breast ( 2 , 10 ) , BT-20 (breast cell) ( 23 ) , BT-549 (breast cell) ( 23 ) , Calu 6 (pulmonary) ( 23 ) , CL1-0 (pulmonary) ( 33 ) , CL1-1 (pulmonary) ( 33 ) , CL1-2 (pulmonary) ( 33 ) , CL1-5 (pulmonary) ( 33 ) , CMK (megakaryoblast) ( 21 ) , CTS (myeloid) ( 21 ) , DOHH2 ('B lymphocyte, precursor') ( 21 ) , Flp-In T-Rex-293 (epithelial) [PRKD1 (human), genetic knockin] ( 24 ) , Flp-In T-Rex-293 (epithelial) ( 24 ) , GM00130 (B lymphocyte) ( 37 ) , H2009 (pulmonary) ( 23 ) , H2077 (pulmonary) ( 23 ) , H2887 (pulmonary) ( 23 ) , H322M (pulmonary) ( 23 ) , HCC1359 (pulmonary) ( 23 ) , HCC1937 (breast cell) ( 23 ) , HCC2279 (pulmonary) ( 23 ) , HCC366 (pulmonary) ( 23 ) , HCC4006 (pulmonary) ( 23 ) , HCC78 (pulmonary) ( 23 ) , HCC827 (pulmonary) ( 23 ) , HEK293T (epithelial) ( 5 ) , HEL (erythroid) ( 21 ) , HeLa (cervical) ( 1 , 8 , 19 , 29 , 32 , 39 , 42 , 43 , 45 , 47 , 48 , 49 , 50 , 51 ) , HeLa S3 (cervical) ( 38 ) , HeLa_Meta (cervical) ( 36 ) , HeLa_Pro (cervical) ( 36 ) , HeLa_Telo (cervical) ( 36 ) , HMLER ('stem, breast cancer') [CXCR4 (human), knockdown] ( 11 ) , HMLER ('stem, breast cancer') ( 11 ) , HOP62 (pulmonary) ( 23 ) , HUES-7 ('stem, embryonic') ( 41 ) , HUES-9 ('stem, embryonic') ( 31 ) , JEKO-1 (B lymphocyte) ( 12 ) , Jurkat (T lymphocyte) ( 17 , 40 ) , K562 (erythroid) ( 19 , 39 , 46 ) , Kasumi-1 (myeloid) ( 21 ) , KG-1 (myeloid) ( 21 , 26 ) , Kit225 (T lymphocyte) ( 28 ) , LCLC-103H (pulmonary) ( 23 ) , liver ( 14 ) , LOU-NH91 (squamous) ( 23 ) , lung ( 15 ) , MCF-7 (breast cell) ( 23 ) , MDA-MB-231 (breast cell) ( 23 ) , MDA-MB-468 (breast cell) ( 23 ) , MV4-11 (macrophage) ( 21 ) , NB10 (neural crest) ( 20 ) , NCI-H1299 (pulmonary) ( 44 ) , NCI-H1395 (pulmonary) ( 23 ) , NCI-H1568 (pulmonary) ( 23 ) , NCI-H157 (pulmonary) ( 23 ) , NCI-H1648 (pulmonary) ( 23 ) , NCI-H1666 (pulmonary) ( 23 ) , NCI-H2030 (pulmonary) ( 23 ) , NCI-H2172 (pulmonary) ( 23 ) , NCI-H322 (pulmonary) ( 23 ) , NCI-H460 (pulmonary) ( 23 ) , NCI-H520 (squamous) ( 23 ) , NCI-H647 (pulmonary) ( 23 ) , NPC (neural crest) ( 20 ) , OCI-ly1 (B lymphocyte) ( 12 ) , OPM-2 (plasma cell) ( 21 ) , ovary ( 10 ) , P31/FUJ (erythroid) ( 21 ) , PC9 (pulmonary) ( 7 , 23 ) , Raji (B lymphocyte) ( 12 ) , REC-1 (B lymphocyte) ( 12 ) , RL ('B lymphocyte, precursor') ( 21 ) , RPMI-8266 (plasma cell) ( 21 ) , SH-SY5Y (neural crest) ( 13 ) , SKBr3 (breast cell) ( 22 ) , SU-DHL-4 (B lymphocyte) ( 12 ) , SU-DHL-6 (B lymphocyte) ( 21 ) , U266 (plasma cell) ( 21 ) , WM239A (melanocyte) ( 6 )

Upstream Regulation
Treatments:
BI_4834 ( 29 ) , EGF ( 1 ) , ischemia ( 10 ) , metastatic potential ( 33 ) , nocodazole ( 38 )

References 

1

Huang H, et al. (2016) Simultaneous Enrichment of Cysteine-containing Peptides and Phosphopeptides Using a Cysteine-specific Phosphonate Adaptable Tag (CysPAT) in Combination with titanium dioxide (TiO2) Chromatography. Mol Cell Proteomics 15, 3282-3296
27281782   Curated Info

2

Mertins P, et al. (2016) Proteogenomics connects somatic mutations to signalling in breast cancer. Nature 534, 55-62
27251275   Curated Info

3

Boeing S, et al. (2016) Multiomic Analysis of the UV-Induced DNA Damage Response. Cell Rep 15, 1597-1610
27184836   Curated Info

4

Malec V, Coulson JM, Urbé S, Clague MJ (2015) Combined Analyses of the VHL and Hypoxia Signaling Axes in an Isogenic Pairing of Renal Clear Cell Carcinoma Cells. J Proteome Res 14, 5263-72
26506913   Curated Info

5

Franchin C, et al. (2015) Quantitative analysis of a phosphoproteome readily altered by the protein kinase CK2 inhibitor quinalizarin in HEK-293T cells. Biochim Biophys Acta 1854, 609-23
25278378   Curated Info

6

Stuart SA, et al. (2015) A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells. Mol Cell Proteomics 14, 1599-615
25850435   Curated Info

7

Tsai CF, et al. (2015) Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics. Nat Commun 6, 6622
25814448   Curated Info

8

Sharma K, et al. (2014) Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling. Cell Rep 8, 1583-94
25159151   Curated Info

9

Wang R, et al. (2014) Global discovery of high-NaCl-induced changes of protein phosphorylation. Am J Physiol Cell Physiol 307, C442-54
24965592   Curated Info

10

Mertins P, et al. (2014) Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels. Mol Cell Proteomics 13, 1690-704
24719451   Curated Info

11

Yi T, et al. (2014) Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1/CXCR4 in breast cancer stem cells. Proc Natl Acad Sci U S A 111, E2182-90
24782546   Curated Info

12

Rolland D, et al. (2014) Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas. Am J Pathol 184, 1331-42
24667141   Curated Info

13

Luerman GC, et al. (2014) Phosphoproteomic evaluation of pharmacological inhibition of leucine-rich repeat kinase 2 reveals significant off-target effects of LRRK-2-IN-1. J Neurochem 128, 561-76
24117733   Curated Info

14

Bian Y, et al. (2014) An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. J Proteomics 96, 253-62
24275569   Curated Info

15

Schweppe DK, Rigas JR, Gerber SA (2013) Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors. J Proteomics 91, 286-96
23911959   Curated Info

16

Kim JY, et al. (2013) Dissection of TBK1 signaling via phosphoproteomics in lung cancer cells. Proc Natl Acad Sci U S A 110, 12414-9
23836654   Curated Info

17

Mertins P, et al. (2013) Integrated proteomic analysis of post-translational modifications by serial enrichment. Nat Methods 10, 634-7
23749302   Curated Info

18

Shiromizu T, et al. (2013) Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project. J Proteome Res 12, 2414-21
23312004   Curated Info

19

Zhou H, et al. (2013) Toward a comprehensive characterization of a human cancer cell phosphoproteome. J Proteome Res 12, 260-71
23186163   Curated Info

20

DeNardo BD, et al. (2013) Quantitative phosphoproteomic analysis identifies activation of the RET and IGF-1R/IR signaling pathways in neuroblastoma. PLoS One 8, e82513
24349301   Curated Info

21

Casado P, et al. (2013) Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors. Genome Biol 14, R37
23628362   Curated Info

22

Imami K, et al. (2012) Temporal profiling of lapatinib-suppressed phosphorylation signals in EGFR/HER2 pathways. Mol Cell Proteomics 11, 1741-57
22964224   Curated Info

23

Klammer M, et al. (2012) Phosphosignature predicts dasatinib response in non-small cell lung cancer. Mol Cell Proteomics 11, 651-68
22617229   Curated Info

24

Franz-Wachtel M, et al. (2012) Global detection of protein kinase D-dependent phosphorylation events in nocodazole-treated human cells. Mol Cell Proteomics 11, 160-70
22496350   Curated Info

25

Beli P, et al. (2012) Proteomic Investigations Reveal a Role for RNA Processing Factor THRAP3 in the DNA Damage Response. Mol Cell 46, 212-25
22424773   Curated Info

26

Weber C, Schreiber TB, Daub H (2012) Dual phosphoproteomics and chemical proteomics analysis of erlotinib and gefitinib interference in acute myeloid leukemia cells. J Proteomics 75, 1343-56
22115753   Curated Info

27

Lundby A, et al. (2012) Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues. Nat Commun 3, 876
22673903   Curated Info

28

Osinalde N, et al. (2011) Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics. J Proteomics 75, 177-91
21722762   Curated Info

29

Grosstessner-Hain K, et al. (2011) Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome. Mol Cell Proteomics 10, M111.008540
21857030   Curated Info

30

Hsu PP, et al. (2011) The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling. Science 332, 1317-22
21659604   Curated Info

31

Rigbolt KT, et al. (2011) System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Sci Signal 4, rs3
21406692   Curated Info

32

Kettenbach AN, et al. (2011) Quantitative phosphoproteomics identifies substrates and functional modules of aurora and polo-like kinase activities in mitotic cells. Sci Signal 4, rs5
21712546   Curated Info

33

Wang YT, et al. (2010) An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion. J Proteome Res 9, 5582-97
20815410   Curated Info

34

Xiao K, et al. (2010) Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR). Proc Natl Acad Sci U S A 107, 15299-304
20686112   Curated Info

35

Christensen GL, et al. (2010) Quantitative phosphoproteomics dissection of seven-transmembrane receptor signaling using full and biased agonists. Mol Cell Proteomics 9, 1540-53
20363803   Curated Info

36

Dulla K, et al. (2010) Quantitative site-specific phosphorylation dynamics of human protein kinases during mitotic progression. Mol Cell Proteomics 9, 1167-81
20097925   Curated Info

37

Bennetzen MV, et al. (2010) Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response. Mol Cell Proteomics 9, 1314-23
20164059   Curated Info

38

Olsen JV, et al. (2010) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci Signal 3, ra3
20068231   Curated Info

39

Pan C, Olsen JV, Daub H, Mann M (2009) Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol Cell Proteomics 8, 2796-808
19651622   Curated Info

40

Possemato A (2009) CST Curation Set: 8362; Year: 2009; Biosample/Treatment: cell line, Jurkat/calyculin_A & pervanadate; Disease: T cell leukemia; SILAC: -; Specificities of Antibodies Used to Purify Peptides prior to LCMS: RXXp[ST] Antibodies Used to Purify Peptides prior to LCMS: Phospho-(Ser/Thr) PKD Substrate Antibody Cat#: 4381, PTMScan(R) Phospho-PKD Substrate Motif (LXRXXpS/pT) Immunoaffinity Beads Cat#: 1986
Curated Info

41

Van Hoof D, et al. (2009) Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5, 214-26
19664995   Curated Info

42

Chen Y, et al. (2009) Combined integrin phosphoproteomic analyses and small interfering RNA--based functional screening identify key regulators for cancer cell adhesion and migration. Cancer Res 69, 3713-20
19351860   Curated Info

43

Chen RQ, et al. (2009) CDC25B mediates rapamycin-induced oncogenic responses in cancer cells. Cancer Res 69, 2663-8
19276368   Curated Info

44

Tsai CF, et al. (2008) Immobilized metal affinity chromatography revisited: pH/acid control toward high selectivity in phosphoproteomics. J Proteome Res 7, 4058-69
18707149   Curated Info

45

Dephoure N, et al. (2008) A quantitative atlas of mitotic phosphorylation. Proc Natl Acad Sci U S A 105, 10762-7
18669648   Curated Info

46

Stokes M (2008) CST Curation Set: 4392; Year: 2008; Biosample/Treatment: cell line, K562/untreated; Disease: chronic myelogenous leukemia; SILAC: -; Specificities of Antibodies Used to Purify Peptides prior to LCMS: p[STY])
Curated Info

47

Ruse CI, et al. (2008) Motif-specific sampling of phosphoproteomes. J Proteome Res 7, 2140-50
18452278   Curated Info

48

McNulty DE, Annan RS (2008) Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection. Mol Cell Proteomics 7, 971-80
18212344   Curated Info

49

Yu LR, et al. (2007) Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra. J Proteome Res 6, 4150-62
17924679   Curated Info

50

Beausoleil SA, et al. (2006) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat Biotechnol 24, 1285-92
16964243   Curated Info

51

Beausoleil SA, et al. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci U S A 101, 12130-5
15302935   Curated Info

52

MS This site is one of 509 sites observed by D. Stover et al using MS/FTMS of peptides from lysates of A431 cells grown either in vitro or as xenografts in BALB/c nu/nu mice. These sites were previously unpublished until now (July 27 2006). 66 sites were previously published in: Stover DR, et al. Differential phosphoprofiles of EGF and EGFR kinase inhibitor-treated human tumor cells and mouse xenografts Clin Proteomics 2004 Mar 01; 1(1): 69-80.
Curated Info