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CIITA human	-------------------------------------------------------------------------MRCL----APRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIF-KHIGPDEVIGESMEMPAEVGQkSQkRPFPEELPADLKHWKPAEPPTVVTGSLLVRPVSDCSTLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGLWQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTsPDRPGsTsPFAPsATDLPSMPEPALTSRANMTEHkTSPTQCPAAGEVSNkLPkWPEPVEQFYRSLQDTYGAEPAGPDGILVEVDLVQARLERsSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVLGKAGQGKsyWAGAVsRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAADEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRGCTLLLtARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRDRPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAELAKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGALWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAASVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLsFLGtRLTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLQQHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDtAGELPAVRDLKkLEFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLsLYNNCICDVGAESLARVLPDMVsLRVMDVQYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
CIITA mouse	MNHFQAILAQVQTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLTLLEKGDLDLTFLSWVCNSLQAPTVERGTSYRDHGDHSLCATMDLGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMELDEETREAYANIAELDQYVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPQKRRFPEEHAMDSKHRKL-------------------------------------------------VPTSRTSLNYLDLPTGHIQI---FTTLPQGLWQISGAGTGLSSVLIYHGEMPQVNQVLPSSSLSIPSLPESPDRPGSTSPFTPSAADLPSMPEPALTSRVNETE-DTSPSPCQEGPESSIKLPKWPEAVERFQHSLQDKYKALPQSPRGPLVAVELVRARLERGSNKSQERELATPDWTERQLAHGGLAEVLQVVSDCRRPGETQVVAVLGKAGQGKSHWARTVSHTWACGQLLQYDFVFYVPCHCLDRPGDTYHLRDLLCPPSLQPLAMDDEVLDYIVRQPDRVLLILDAFEELEAQDGLLHGPCGSLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAKTYMRHYFENSGTAGNQDKALGLLEGQPLLCSYSHSPVVCRAVCQLSKALLEQGTEAQLPCTLTGLYVSLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETRFSSVEVKTWAVTQGLMQQTLETTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPRAHCLGALVEPAVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAHETQQPGIWEHVAHQLPGHLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGVEPSGLGNLVGLSCVTSFRASLSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVEDLDRLVQTQRLRNPSEDAAKDLPAIRDLKKLEFALGPILGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDKGVSKLSATFPQLKALETLNLSQNNITDVGACKLAEALPALAKSLLRLSLYNNCICDKGAKSLAQVLPDMVsLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARISLR
	.........................................................................::*:....:::::*:::::::::*:****:**::**:************:***:**************:**************:**:***:*********************:********:*.:***::*::**::*:*:*:***:***:****:::*:**:*:.................................................:*:*::**::*:**:*:**:...::***:******:****:**::*****:**::**:*:*::::::**:***********:***:*************:*:**.:***::*::::*:*:*******:**:*::****:*:*:*::*:*:**:*:**:*****:*:**:*********:*****:*******::::::***:**:*:***********:**::**::****:*:******:******:****:*:*:***:::::***:::***:::*:::*********:*********:**::**::::***********:**:******************:********:**:::**::**::*:::***:**::::**:**:**:::***:*:****::********:****:*::*:**:*******:***:**::******:*******************::*:*::*:***:::**:*::::::*::***:**********:***:::***********************************:***:*:*****::*::**::*******:******::*****::**********::::***:**:::***:************::***:***:*:********:**::*****:********:***:****:********:**::******************:******::******:*::***:*::***:************::******:*::**:***********:********:***:*********:*************:**:*******:**:**************:**:***:**************:************:**::**:*************:*******:*:*****
Consensus	MNHFQAILAQVQTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLTLLEKGDLDLTFLSMRCNSLQAAPREAGSSLRDHQDHSQCATMDLGPLEGGYLELLNSDADPLCLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFIEHIGADEGIGENIEIPAEAGQKPQKRRFPEEHAADLKHRKLAEPPTVVTGSLLVRPVSDCSTLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSRSSLNCLNLPEGHIQIVPTISTLPQGLWQISEAGTGLSSILIYHGEMPQANQVLPPSGLSIHGLPESPDRPGSTSPFAPSAADLPSMPEPALTSRANETEHDTSPSQCQAAGESSNKLPKWPEAVERFQRSLQDKYGAEPAGPRGILVAVDLVRARLERGSNKSQERELATPDWAERQLAQGGLAEVLQAAKDCRRPRETRVIAVLGKAGQGKSHWARAVSRAWACGRLLQYDFVFSVPCHCLNRPGDAYGLRDLLCPLGLQPLAAADEVLDHILRRPDRVLLILDAFEELEAQDGLLHGPCGPAPAEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFELPGFSMEQAQAYMRRYFENSGMAENQDRALGLLRDRPLLCSHSHSPTLCRAVCQLSEALLEQGEDAQLPCTLTGLYVGLLGRAAQNSPPGALAELAKLAWELGRRHQSTLQEDRFPSADVRTWAMAQGLMQQPLRAAEAQLAFPSFLLQCFLGALWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPRARCLGALLEPAAAASADRKQKVLARYLKRLQLGTLRARRLLELLHCAHEAQQAGIWQHVAQQLPGRLSFLGTRLTPPDAHVLGRALEAAGQDFSLDLRQTGICPSGLGNLVGLSCVTRFRAALSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSLKDVEDLDRLVQTQRLRNPSEDAAGDLPAIRDLKKLEFALGPILGPQAFPKLARILPAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKALETLNLSQNNITDLGACKLAEALPALAASLLRLSLYNNCICDKGAESLARVLPDMVSLRVMDVQFNKFTAAGAQQLAASLRRCPQVETLAMWTPTIPFGVQEHLQQQDARISLR