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Protein Page:
SCN9A (human)

Overview
SCN9A Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain. Defects in SCN9A are the cause of primary erythermalgia (PERYTHM). It is an autosomal dominant disease characterized by recurrent episodes of severe pain associated with redness and warmth in the feet or hands. Defects in SCN9A are the cause of congenital indifference to pain autosomal recessive (CIPAR); also known as channelopathy-associated insensitivity to pain. A disorder characterized by congenital inability to perceive any form of pain, in any part of the body. All other sensory modalities are preserved and the peripheral and central nervous systems are apparently intact. Patients perceive the sensations of touch, warm and cold temperature, proprioception, tickle and pressure, but not painful stimuli. There is no evidence of a motor or sensory neuropathy, either axonal or demyelinating. Defects in SCN9A are a cause of paroxysmal extreme pain disorder (PEPD); previously known as familial rectal pain (FRP). PEPD is an autosomal dominant paroxysmal disorder of pain and autonomic dysfunction. The distinctive features are paroxysmal episodes of burning pain in the rectal, ocular, and mandibular areas accompanied by autonomic manifestations such as skin flushing. Defects in SCN9A are a cause of generalized epilepsy with febrile seizures plus type 7 (GEFS+7). GEFS+7 is a rare autosomal dominant, familial condition with incomplete penetrance and large intrafamilial variability. Patients display febrile seizures persisting sometimes beyond the age of 6 years and/or a variety of afebrile seizure types. This disease combines febrile seizures, generalized seizures often precipitated by fever at age 6 years or more, and partial seizures, with a variable degree of severity. Defects in SCN9A are the cause of familial febrile convulsions type 3B (FEB3B). FEB3B consists of seizures associated with febrile episodes in childhood without any evidence of intracranial infection or defined pathologic or traumatic cause. It is a common condition, affecting 2-5% of children aged 3 months to 5 years. The majority are simple febrile seizures (generally defined as generalized onset, single seizures with a duration of less than 30 minutes). Complex febrile seizures are characterized by focal onset, duration greater than 30 minutes, and/or more than one seizure in a 24 hour period. The likelihood of developing epilepsy following simple febrile seizures is low. Complex febrile seizures are associated with a moderately increased incidence of epilepsy. Belongs to the sodium channel (TC 1.A.1.10) family. Nav1.7/SCN9A subfamily. 3 isoforms of the human protein are produced by alternative splicing. Note: This description may include information from UniProtKB.
Protein type: Channel, sodium; Membrane protein, integral; Membrane protein, multi-pass
Cellular Component: voltage-gated sodium channel complex
Molecular Function: sodium ion binding; voltage-gated sodium channel activity
Biological Process: behavioral response to pain; response to toxin; sodium ion transport; generation of action potential; inflammatory response; post-embryonic development
Reference #:  Q15858 (UniProtKB)
Alt. Names/Synonyms: ETHA; FEB3B; hNE-Na; Nav1.7; NE-NA; NENA; Neuroendocrine sodium channel; Peripheral sodium channel 1; PN1; SCN9A; Sodium channel protein type 9 subunit alpha; Sodium channel protein type IX subunit alpha; sodium channel, voltage-gated, type IX, alpha polypeptide; sodium channel, voltage-gated, type IX, alpha subunit; voltage-gated sodium channel alpha subunit Nav1.7; Voltage-gated sodium channel subunit alpha Nav1.7
Gene Symbols: SCN9A
Molecular weight: 226,372 Da
Basal Isoelectric point: 6.55  Predict pI for various phosphorylation states
Select Structure to View Below

SCN9A

Protein Structure Not Found.


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Modification Sites and Domains  

Modification Sites in Parent Protein, Orthologs, and Isoforms  
 

Show Multiple Sequence Alignment


 SS 

SS: The number of records in which this modification site was determined using site-specific methods. SS methods include amino acid sequencing, site-directed mutagenesis, modification site-specific antibodies, specific MS strategies, etc.


 MS 

MS: The number of records in which this modification site was assigned using ONLY proteomic discovery-mode mass spectrometry.


       human

► Hide Isoforms
 
0 1 - gap
0 1 Y302 SEEDFRKYFYYLEGS
0 1 Y304 EDFRKYFYYLEGSKD
0 1 Y305 DFRKYFYYLEGSKDA
0 1 S309 YFYYLEGSKDALLCG
0 1 S503 DAEKLSKSESEDSIR
0 1 S505 EKLSKSESEDSIRRK
0 1 T552 SARRSSRTSLFSFKG
0 6 S635 VSLVDGRSALMLPNG
0 2 S691-p NLRQRAMsRASILTN
  SCN9A iso3  
- gap
Y302 SEEDFRKYFYYLEGS
Y304 EDFRKYFYYLEGSKD
Y305 DFRKYFYYLEGSKDA
S309 YFYYLEGSKDALLCG
S503 DAEKLSKSESEDSIR
S505 EKLSKSESEDSIRRK
T552 SARRSSRTSLFSFKG
S635-p VSLVDGRsALMLPNG
S680 NLRQRAMSRASILTN
  mouse

► Hide Isoforms
 
- gap
Y302 SEEELKRYFYYLEGS
Y304 EELKRYFYYLEGSKD
Y305 ELKRYFYYLEGSKDA
S309 YFYYLEGSKDALLCG
S502-p DDEKLSKsGsEESIR
S504-p EKLSKsGsEESIRKK
T551-p SARRSSRtSLFSFKG
S634 VSLVDGPSALMLPNG
S690-p HLRQRAMsRASILTN
  SCN9A iso2  
T301-p QRKCKVKtMGyFyyL
Y304-p CKVKtMGyFyyLEGs
Y306-p VKtMGyFyyLEGsKD
Y307-p KtMGyFyyLEGsKDA
S311-p yFyyLEGsKDALLCG
S504 DDEKLSKSGSEESIR
S506 EKLSKSGSEESIRKK
T553 SARRSSRTSLFSFKG
S636 VSLVDGPSALMLPNG
S681 HLRQRAMSRASILTN
  rat

 
- gap
Y302 SEEELKKYFYYLEGS
Y304 EELKKYFYYLEGSKD
Y305 ELKKYFYYLEGSKDA
S309 YFYYLEGSKDALLCG
S502 DDEKLSKSGSEESIR
S504 EKLSKSGSEESIRKK
T551 SARRSSRTSLFSFKG
S634 VSLVDGPSALMLPNG
S690 HLRQRAMSRASILTN
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